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1

[The IMA Volumes in Mathematics and its Applications] Mathematical Approaches to Biomolecular Structure and Dynamics Volume 82 || Hamiltonian Formulations and Symmetries in Rod Mechanics

Mesirov, Jill P., Schulten, Klaus, Sumners, De Witt

Year:

1996

Language:

english

File:

PDF, 4.43 MB

english, 1996

2

Continued fraction expansions of rational expressions with irreducible denominators in characteristic 2

Jill P. Mesirov, Melvin M. Sweet

Journal:

Journal of Number Theory

Year:

1987

Language:

english

File:

PDF, 196 KB

english, 1987

3

Study of protein sequence comparison metrics on the connection machine CM-2

Eric Lander, Jill P. Mesirov, Washington Taylor

Journal:

The Journal of Supercomputing

Year:

1989

Language:

english

File:

PDF, 796 KB

english, 1989

4

Integrative genomics viewer

Robinson, James T, Thorvaldsdóttir, Helga, Winckler, Wendy, Guttman, Mitchell, Lander, Eric S, Getz, Gad, Mesirov, Jill P

Journal:

Nature Biotechnology

Year:

2011

Language:

english

File:

PDF, 557 KB

english, 2011

5

Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1

Roel G.W. Verhaak, Katherine A. Hoadley, Elizabeth Purdom, Victoria Wang, Yuan Qi, Matthew D. Wilkerson, C. Ryan Miller, Li Ding, Todd Golub, Jill P. Mesirov, Gabriele Alexe, Michael Lawrence, Michael

Journal:

Year:

2010

Language:

english

File:

PDF, 1.31 MB

english, 2010

6

Su.86. Automated High-dimensional Flow Cytometric Data Analysis

Xinli Hu, Saumyadipta Pyne, Elizabeth Rossin, Pablo Tamayo, David Hafler, Jill Mesirov, Philip De Jager

Journal:

Clinical Immunology

Year:

2008

Language:

english

File:

PDF, 40 KB

english, 2008

7

RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure

Lu, Zhipeng, Zhang, Qiangfeng Cliff, Lee, Byron, Flynn, Ryan A., Smith, Martin A., Robinson, James T., Davidovich, Chen, Gooding, Anne R., Goodrich, Karen J., Mattick, John S., Mesirov, Jill P., Cech,

Journal:

Year:

2016

Language:

english

File:

PDF, 3.26 MB

english, 2016

8

Two-dimensional, viscous, incompressible flow in complex geometries on a massively parallel processor

J.A Sethian, Jean-Philippe Brunet, Adam Greenberg, Jill P Mesirov

Journal:

Journal of Computational Physics

Year:

1992

Language:

english

File:

PDF, 19.16 MB

english, 1992

9

The backpropagation algorithm on grid and hypercube architectures

Xiru Zhang, Michael McKenna, Jill P Mesirov, David L Waltz

Journal:

Parallel Computing

Year:

1990

Language:

english

File:

PDF, 728 KB

english, 1990

10

A parallel implementation of the random vortex method

J.A. Sethian, Jean-Philippe Brunet, Adam Greenberg, Jill P. Mesirov

Journal:

Computer Physics Communications

Year:

1991

Language:

english

File:

PDF, 700 KB

english, 1991

11

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

Fusaro, Vincent A, Mani, D R, Mesirov, Jill P, Carr, Steven A

Journal:

Nature Biotechnology

Year:

2009

Language:

english

File:

PDF, 431 KB

english, 2009

12

GenePattern 2.0

Tamayo, Pablo, Mesirov, Jill P, Reich, Michael, Liefeld, Ted, Gould, Joshua, Lerner, Jim

Journal:

Nature Genetics

Year:

2006

Language:

english

File:

PDF, 193 KB

english, 2006

13

An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis

Sweet-Cordero, Alejandro, Mukherjee, Sayan, Subramanian, Aravind, You, Han, Roix, Jeffrey J, Ladd-Acosta, Christine, Mesirov, Jill, Golub, Todd R, Jacks, Tyler

Journal:

Nature Genetics

Year:

2004

Language:

english

File:

PDF, 267 KB

english, 2004

14

Novel Computational Methods to Enhance the Analysis of Cytometric Immunophenotypes

Philip De Jager, Saumyadipta Pyne, Elizabeth Rossin, Jill Mesirov, Pablo Tamayo, David Hafler

Journal:

Clinical Immunology

Year:

2007

Language:

english

File:

PDF, 53 KB

english, 2007

15

Portraits of breast cancer progression

Gul S Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 5.05 MB

english, 2007

16

[Lecture Notes in Computer Science] Research in Computational Molecular Biology Volume 3500 || Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution

Miyano, Satoru, Mesirov, Jill, Kasif, Simon, Istrail, Sorin, Pevzner, Pavel A., Waterman, Michael

Year:

2005

Language:

english

File:

PDF, 227 KB

english, 2005

17

[Lecture Notes in Computer Science] Research in Computational Molecular Biology Volume 3500 || Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks

Miyano, Satoru, Mesirov, Jill, Kasif, Simon, Istrail, Sorin, Pevzner, Pavel A., Waterman, Michael

Year:

2005

Language:

english

File:

PDF, 176 KB

english, 2005

18

Hybrid system for protein secondary structure prediction

Xiru Zhang, Jill P. Mesirov, David L. Waltz

Journal:

Journal of Molecular Biology

Year:

1992

Language:

english

File:

PDF, 1.71 MB

english, 1992

19

Erratum: Hypercube Algorithms for Direct N-Body Solvers for Different Granularities

Brunet, Jean-Philippe, Edelman, Alan, Mesirov, Jill P.

Journal:

SIAM Journal on Scientific Computing

Year:

1994

Language:

english

File:

PDF, 37 KB

english, 1994

20

Hypercube Algorithms for Direct N-Body Solvers for Different Granularities

Brunet, Jean-Philippe, Mesirov, Jill P., Edelman, Alan

Journal:

SIAM Journal on Scientific Computing

Year:

1993

Language:

english

File:

PDF, 1.91 MB

english, 1993

21

Data Parallel Quadratic Programming on Box-Constrained Problems

McKenna, Mike P., Mesirov, Jill P., Zenios, Stavros A.

Journal:

SIAM Journal on Optimization

Year:

1995

Language:

english

File:

PDF, 2.51 MB

english, 1995

22

Prediction of response to therapy with ezatiostat in lower risk myelodysplastic syndrome

Naomi Galili, Pablo Tamayo, Olga B Botvinnik, Jill P Mesirov, Margarita R Brooks, Gail Brown, Azra Raza

Journal:

Journal of Hematology & Oncology

Year:

2012

Language:

english

File:

PDF, 1.24 MB

english, 2012

23

Criteria for the use of omics-based predictors in clinical trials

McShane, Lisa M., Cavenagh, Margaret M., Lively, Tracy G., Eberhard, David A., Bigbee, William L., Williams, P. Mickey, Mesirov, Jill P., Polley, Mei-Yin C., Kim, Kelly Y., Tricoli, James V., Taylor,

Journal:

Year:

2013

Language:

english

File:

PDF, 99 KB

english, 2013

24

Interpreting Patterns of Gene Expression with Self-Organizing Maps: Methods and Application to Hematopoietic Differentiation

Pablo Tamayo, Donna Slonim, Jill Mesirov, Qing Zhu, Sutisak Kitareewan, Ethan Dmitrovsky, Eric S. Lander and Todd R. Golub

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 2.40 MB

english, 1999

25

An Analytical Method for Multiclass Molecular Cancer Classification

Ryan Rifkin, Sayan Mukherjee, Pablo Tamayo, Sridhar Ramaswamy, Chen-Hsiang Yeang, Michael Angelo, Michael Reich, Tomaso Poggio, Eric S. Lander, Todd R. Golub and Jill P. Mesirov

Journal:

Year:

2003

Language:

english

File:

PDF, 2.33 MB

english, 2003

26

Gene signatures related to B-cell proliferation predict influenza vaccine-induced antibody response

Tan, Yan, Tamayo, Pablo, Nakaya, Helder, Pulendran, Bali, Mesirov, Jill P., Haining, W. Nicholas

Journal:

European Journal of Immunology

Year:

2014

Language:

english

File:

PDF, 990 KB

english, 2014

27

An Analytical Method for Multiclass Molecular Cancer Classification

Rifkin, Ryan, Mukherjee, Sayan, Tamayo, Pablo, Ramaswamy, Sridhar, Yeang, Chen-Hsiang, Angelo, Michael, Reich, Michael, Poggio, Tomaso, Lander, Eric S., Golub, Todd R., Mesirov, Jill P.

Journal:

Year:

2003

Language:

english

File:

PDF, 772 KB

english, 2003

28

[Lecture Notes in Computer Science] Research in Computational Molecular Biology Volume 3500 || A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction

Miyano, Satoru, Mesirov, Jill, Kasif, Simon, Istrail, Sorin, Pevzner, Pavel A., Waterman, Michael

Year:

2005

Language:

english

File:

PDF, 211 KB

english, 2005

29

[Lecture Notes in Computer Science] Research in Computational Molecular Biology Volume 3500 || Rapid Protein Side-Chain Packing via Tree Decomposition

Miyano, Satoru, Mesirov, Jill, Kasif, Simon, Istrail, Sorin, Pevzner, Pavel A., Waterman, Michael

Year:

2005

Language:

english

File:

PDF, 207 KB

english, 2005

30

[Lecture Notes in Computer Science] Research in Computational Molecular Biology Volume 3500 ||

Miyano, Satoru, Mesirov, Jill, Kasif, Simon, Istrail, Sorin, Pevzner, Pavel A., Waterman, Michael

Year:

2005

Language:

english

File:

PDF, 10.47 MB

english, 2005

31

Estimating Dataset Size Requirements for Classifying DNA Microarray Data

Mukherjee, Sayan, Tamayo, Pablo, Rogers, Simon, Rifkin, Ryan, Engle, Anna, Campbell, Colin, Golub, Todd R., Mesirov, Jill P.

Journal:

Journal of Computational Biology

Year:

2003

Language:

english

File:

PDF, 587 KB

english, 2003

32

Quantitative visualization of alternative exon expression from RNA-seq data

Katz, Yarden, Wang, Eric T., Silterra, Jacob, Schwartz, Schraga, Wong, Bang, Thorvaldsdóttir, Helga, Robinson, James T., Mesirov, Jill P., Airoldi, Edoardo M., Burge, Christopher B.

Journal:

Year:

2015

Language:

english

File:

PDF, 398 KB

english, 2015

33

A genomic data viewer for iPad

Thorvaldsdóttir, Helga, Robinson, James T, Turner, Douglass, Mesirov, Jill P

Journal:

Year:

2015

Language:

english

File:

PDF, 1.91 MB

english, 2015

34

Plasmodium falciparumgene expression measured directly from tissue during human infection

Van Tyne, Daria, Tan, Yan, Daily, Johanna P, Kamiza, Steve, Seydel, Karl, Taylor, Terrie, Mesirov, Jill P, Wirth, Dyann F, Milner, Danny A

Journal:

Genome Medicine

Year:

2014

Language:

english

File:

PDF, 1.09 MB

english, 2014

35

ISMB 2008 Toronto

Linial, Michal, Mesirov, Jill P., Morrison McKay, B. J., Rost, Burkhard

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 331 KB

english, 2008

36

[ACM Press the 1991 ACM/IEEE conference - Albuquerque, New Mexico, United States (1991.11.18-1991.11.22)] Proceedings of the 1991 ACM/IEEE conference on Supercomputing - Supercomputing '91 - Computing turbulent flow in complex geometries on a massively parallel processor

Sethian, James A., Brunet, Jean-Philippe, Greenberg, Adam, Mesirov, Jill P.

Year:

1991

Language:

english

File:

PDF, 1.51 MB

english, 1991

37

[ACM Press the fourth annual international conference - Tokyo, Japan (2000..-..)] Proceedings of the fourth annual international conference on Computational molecular biology - RECOMB '00 - Class prediction and discovery using gene expression data

Slonim, Donna K., Tamayo, Pablo, Mesirov, Jill P., Golub, Todd R., Lander, Eric S.

Year:

2000

Language:

english

File:

PDF, 838 KB

english, 2000

38

[ACM Press the fourth annual international conference - Tokyo, Japan (2000..-..)] Proceedings of the fourth annual international conference on Computational molecular biology - RECOMB '00 - Sequencing a genome by walking with clone-end sequences (abstract)

Batzoglou, Serafim, Berger, Bonnie, Mesirov, Jill, Lander, Eric S.

Year:

2000

Language:

english

File:

PDF, 43 KB

english, 2000

39

[Lecture Notes in Computer Science] Research in Computational Molecular Biology Volume 3500 || Reconstruction of Reticulate Networks from Gene Trees

Miyano, Satoru, Mesirov, Jill, Kasif, Simon, Istrail, Sorin, Pevzner, Pavel A., Waterman, Michael

Year:

2005

Language:

english

File:

PDF, 653 KB

english, 2005

40

[ACM Press the 1991 ACM/IEEE conference - Albuquerque, New Mexico, United States (1991.11.18-1991.11.22)] Proceedings of the 1991 ACM/IEEE conference on Supercomputing - Supercomputing '91 - Parallel approaches to short range molecular dynamics simulations

Tamayo, Pablo, Mesirov, Jill P., Boghosian, Bruce M.

Year:

1991

Language:

english

File:

PDF, 799 KB

english, 1991

41

[ACM Press the fourth annual international conference - Tokyo, Japan (2000..-..)] Proceedings of the fourth annual international conference on Computational molecular biology - RECOMB '00 - Human and mouse gene structure

Batzoglou, Serafim, Pachter, Lior, Mesirov, Jill, Berger, Bonnie, Lander, Eric S.

Year:

2000

Language:

english

File:

PDF, 546 KB

english, 2000

42

[Lecture Notes in Computer Science] Research in Computational Molecular Biology Volume 3500 || RNA-RNA Interaction Prediction and Antisense RNA Target Search

Miyano, Satoru, Mesirov, Jill, Kasif, Simon, Istrail, Sorin, Pevzner, Pavel A., Waterman, Michael

Year:

2005

Language:

english

File:

PDF, 403 KB

english, 2005

43

[Lecture Notes in Computer Science] Research in Computational Molecular Biology Volume 3500 || Maximum Likelihood of Evolutionary Trees Is Hard

Miyano, Satoru, Mesirov, Jill, Kasif, Simon, Istrail, Sorin, Pevzner, Pavel A., Waterman, Michael

Year:

2005

Language:

english

File:

PDF, 209 KB

english, 2005

44

MYC Regulation of a "Poor-Prognosis" Metastatic Cancer Cell State

Anita Wolfer, Ben S. Wittner, Daniel Irimia, Richard J. Flavin, Mathieu Lupien, Ruwanthi N. Gunawardane, Clifford A. Meyer, Eric S. Lightcap, Pablo Tamayo, Jill P. Mesirov, X. Shirley Liu, Toshi Shiod

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.72 MB

english, 2010

45

Role of Tet1/3 Genes and Chromatin Remodeling Genes in Cerebellar Circuit Formation

Zhu, Xiaodong, Girardo, David, Govek, Eve-Ellen, John, Keisha, Mellén, Marian, Tamayo, Pablo, Mesirov, Jill P., Hatten, Mary E.

Journal:

Year:

2015

Language:

english

File:

PDF, 3.60 MB

english, 2015

46

Compendium of Immune Signatures Identifies Conserved and Species-Specific Biology in Response to Inflammation

Godec, Jernej, Tan, Yan, Liberzon, Arthur, Tamayo, Pablo, Bhattacharya, Sanchita, Butte, Atul J., Mesirov, Jill P., Haining, W. Nicholas

Journal:

Year:

2016

Language:

english

File:

PDF, 4.53 MB

english, 2016

47

The Molecular Signatures Database Hallmark Gene Set Collection

Liberzon, Arthur, Birger, Chet, Thorvaldsdóttir, Helga, Ghandi, Mahmoud, Mesirov, Jill P., Tamayo, Pablo

Journal:

Year:

2015

Language:

english

File:

PDF, 1.91 MB

english, 2015

48

[Lecture Notes in Computer Science] Research in Computational Molecular Biology Volume 3500 || Using Multiple Alignments to Improve Gene Prediction

Miyano, Satoru, Mesirov, Jill, Kasif, Simon, Istrail, Sorin, Pevzner, Pavel A., Waterman, Michael

Year:

2005

Language:

english

File:

PDF, 183 KB

english, 2005

49

[Lecture Notes in Computer Science] Research in Computational Molecular Biology Volume 3500 || Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis

Miyano, Satoru, Mesirov, Jill, Kasif, Simon, Istrail, Sorin, Pevzner, Pavel A., Waterman, Michael

Year:

2005

Language:

english

File:

PDF, 273 KB

english, 2005

50

[Lecture Notes in Computer Science] Research in Computational Molecular Biology Volume 3500 || Efficient q-Gram Filters for Finding All ε-Matches over a Given Length

Miyano, Satoru, Mesirov, Jill, Kasif, Simon, Istrail, Sorin, Pevzner, Pavel A., Waterman, Michael

Year:

2005

Language:

english

File:

PDF, 234 KB

english, 2005

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